IL_4V8P_593

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_593 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.069

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V8P|1|D1|G|1922
4V8P|1|D1|G|1923
4V8P|1|D1|A|1924
4V8P|1|D1|A|1925
4V8P|1|D1|G|1926
4V8P|1|D1|U|1927
4V8P|1|D1|C|1928
4V8P|1|D1|G|1929
4V8P|1|D1|G|1930
*
4V8P|1|D1|C|2328
4V8P|1|D1|U|2329
4V8P|1|D1|G|2330
4V8P|1|D1|U|2331
4V8P|1|D1|C|2332

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CB

RIBOSOMAL PROTEIN L3

Chain CJ

RPL23