IL_4V8Q_052

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

4V8Q|1|AA|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Q_052 not in the Motif Atlas

Homologous match to IL_9DFE_053

Geometric discrepancy: 0.5922

The information below is about IL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V8Q|1|AA|U|1415
4V8Q|1|AA|G|1416
*
4V8Q|1|AA|C|1582
4V8Q|1|AA|A|1583
4V8Q|1|AA|C|1584
4V8Q|1|AA|A|1586
4V8Q|1|AA|A|1587

Current chains

Chain AA

23S ribosomal RNA

Nearby chains