IL_9DFE_053

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

9DFE|1|1A|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9DFE|1|1A|U|1415
9DFE|1|1A|G|1416
*
9DFE|1|1A|C|1582
9DFE|1|1A|A|1583
9DFE|1|1A|C|1584
9DFE|1|1A|A|1586
9DFE|1|1A|A|1587

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains