IL_4V8Q_143
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Q_143 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1151
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4V8Q|1|BA|U|580
4V8Q|1|BA|G|581
4V8Q|1|BA|U|582
4V8Q|1|BA|A|583
4V8Q|1|BA|G|584
*
4V8Q|1|BA|U|757
4V8Q|1|BA|G|758
4V8Q|1|BA|A|759
4V8Q|1|BA|G|760
4V8Q|1|BA|G|761
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- 30S RIBOSOMAL PROTEIN S8
- Chain BL
- 30S RIBOSOMAL PROTEIN S12
- Chain BO
- 30S RIBOSOMAL PROTEIN S15
- Chain BQ
- 30S RIBOSOMAL PROTEIN S17
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