IL_4V8T_002
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 4V8T|1|8|C|151
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_002 not in the Motif Atlas
- Geometric match to IL_5TBW_002
- Geometric discrepancy: 0.1671
- The information below is about IL_5TBW_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.13
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 40
Unit IDs
4V8T|1|5|C|7
4V8T|1|5|C|8
*
4V8T|1|8|G|150
4V8T|1|8|C|151
4V8T|1|8|G|152
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
- Chain 8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain G
- 60S RIBOSOMAL PROTEIN L8-A
- Chain N
- 60S RIBOSOMAL PROTEIN L15-A
- Chain X
- 60S RIBOSOMAL PROTEIN L25
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