IL_4V8T_024
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_024 not in the Motif Atlas
- Homologous match to IL_5TBW_023
- Geometric discrepancy: 0.0791
- The information below is about IL_5TBW_023
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_07235.3
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8T|1|5|G|725
4V8T|1|5|G|726
4V8T|1|5|G|727
4V8T|1|5|G|728
*
4V8T|1|5|U|741
4V8T|1|5|G|742
4V8T|1|5|C|743
4V8T|1|5|A|744
4V8T|1|5|C|745
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain Q
- 60S RIBOSOMAL PROTEIN L18-B
- Chain b
- 60S RIBOSOMAL PROTEIN L29
Coloring options: