IL_4V8T_042
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V8T|1|5|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_042 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.0725
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
4V8T|1|5|G|999
4V8T|1|5|C|1000
4V8T|1|5|G|1001
4V8T|1|5|A|1002
4V8T|1|5|A|1003
4V8T|1|5|U|1004
*
4V8T|1|5|A|1046
4V8T|1|5|A|1047
4V8T|1|5|A|1048
4V8T|1|5|C|1049
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain I
- 60S RIBOSOMAL PROTEIN L10
- Chain T
- 60S RIBOSOMAL PROTEIN L21-A
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