IL_4V8T_048

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GGUC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_048 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2379

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V8T|1|5|G|1020
4V8T|1|5|G|1021
4V8T|1|5|U|1022
4V8T|1|5|C|1023
*
4V8T|1|5|G|1029
4V8T|1|5|A|1030
4V8T|1|5|C|1031
4V8T|1|5|C|1032

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains