IL_4V8T_070
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GGC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGC,GCC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_070 not in the Motif Atlas
- Geometric match to IL_5F5F_001
- Geometric discrepancy: 0.2573
- The information below is about IL_5F5F_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
4V8T|1|5|G|1560
4V8T|1|5|G|1561
4V8T|1|5|C|1562
*
4V8T|1|5|G|1577
4V8T|1|5|C|1578
4V8T|1|5|C|1579
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain G
- 60S RIBOSOMAL PROTEIN L8-A
- Chain X
- 60S RIBOSOMAL PROTEIN L25
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