IL_4V8T_090

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4V8T|1|5|U|2159, 4V8T|1|5|U|2175, 4V8T|1|5|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_090 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0444

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8T|1|5|C|2156
4V8T|1|5|G|2157
4V8T|1|5|A|2158
4V8T|1|5|U|2159
4V8T|1|5|G|2160
4V8T|1|5|G|2161
*
4V8T|1|5|U|2173
4V8T|1|5|G|2174
4V8T|1|5|U|2175
4V8T|1|5|U|2176
4V8T|1|5|G|2177
4V8T|1|5|A|2178
4V8T|1|5|C|2179
4V8T|1|5|G|2180

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L2-B

Chain p

60S RIBOSOMAL PROTEIN L43-A