IL_4V8T_095

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4V8T|1|5|A|2281, 4V8T|1|5|C|2287, 4V8T|1|5|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_095 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0688

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8T|1|5|C|2277
4V8T|1|5|C|2278
4V8T|1|5|A|2279
4V8T|1|5|A|2280
4V8T|1|5|A|2281
4V8T|1|5|U|2282
4V8T|1|5|G|2283
4V8T|1|5|C|2284
4V8T|1|5|C|2285
4V8T|1|5|U|2286
4V8T|1|5|C|2287
4V8T|1|5|G|2288
*
4V8T|1|5|C|2304
4V8T|1|5|G|2305
4V8T|1|5|C|2306
4V8T|1|5|G|2307

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain n

60S RIBOSOMAL PROTEIN L41-A