IL_4V8T_096

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_096 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.0689

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8T|1|5|G|2391
4V8T|1|5|C|2392
4V8T|1|5|G|2393
4V8T|1|5|G|2394
*
4V8T|1|5|U|2986
4V8T|1|5|A|2987
4V8T|1|5|C|2988

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain O

60S RIBOSOMAL PROTEIN L16-A