IL_4V8T_101
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 4V8T|1|5|G|2522, 4V8T|1|5|G|2585, 4V8T|1|5|G|2586
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_101 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.1641
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|A|2520
4V8T|1|5|U|2521
4V8T|1|5|G|2522
4V8T|1|5|A|2523
4V8T|1|5|A|2524
4V8T|1|5|G|2525
4V8T|1|5|C|2526
*
4V8T|1|5|G|2584
4V8T|1|5|G|2585
4V8T|1|5|G|2586
4V8T|1|5|U|2587
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain G
- 60S RIBOSOMAL PROTEIN L8-A
- Chain X
- 60S RIBOSOMAL PROTEIN L25
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