IL_4V8T_111

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

4V8T|1|5|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_111 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0567

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V8T|1|5|G|2828
4V8T|1|5|U|2829
4V8T|1|5|G|2830
*
4V8T|1|5|U|2858
4V8T|1|5|U|2859
4V8T|1|5|U|2860
4V8T|1|5|U|2861
4V8T|1|5|U|2862

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain I

60S RIBOSOMAL PROTEIN L10