IL_4V8T_112
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_112 not in the Motif Atlas
- Homologous match to IL_5TBW_106
- Geometric discrepancy: 0.0513
- The information below is about IL_5TBW_106
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V8T|1|5|U|2835
4V8T|1|5|C|2836
4V8T|1|5|A|2837
4V8T|1|5|A|2838
4V8T|1|5|G|2839
*
4V8T|1|5|C|2849
4V8T|1|5|G|2850
4V8T|1|5|A|2851
4V8T|1|5|C|2852
4V8T|1|5|A|2853
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain I
- 60S RIBOSOMAL PROTEIN L10
- Chain m
- 60S RIBOSOMAL PROTEIN L40
Coloring options: