IL_4V8T_114

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V8T|1|5|G|2945, 4V8T|1|5|A|2946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_114 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.054

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8T|1|5|C|2879
4V8T|1|5|U|2880
4V8T|1|5|C|2881
*
4V8T|1|5|G|2943
4V8T|1|5|U|2944
4V8T|1|5|G|2945
4V8T|1|5|A|2946
4V8T|1|5|G|2947

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain V

60S RIBOSOMAL PROTEIN L23-A