IL_4V8T_120

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

4V8T|1|5|A|3142, 4V8T|1|5|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_120 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0611

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V8T|1|5|C|3004
4V8T|1|5|A|3005
4V8T|1|5|A|3006
4V8T|1|5|U|3007
*
4V8T|1|5|A|3139
4V8T|1|5|G|3140
4V8T|1|5|A|3141
4V8T|1|5|A|3142
4V8T|1|5|C|3143
4V8T|1|5|G|3144

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain O

60S RIBOSOMAL PROTEIN L16-A