IL_4V8T_139

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8T_139 not in the Motif Atlas

Homologous match to IL_5TBW_133

Geometric discrepancy: 0.0532

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

4V8T|1|5|U|3332
4V8T|1|5|G|3333
4V8T|1|5|U|3334
4V8T|1|5|A|3335
4V8T|1|5|A|3336
4V8T|1|5|G|3337
*
4V8T|1|5|C|3367
4V8T|1|5|U|3368
4V8T|1|5|G|3369
4V8T|1|5|A|3370
4V8T|1|5|G|3371

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain W

60S RIBOSOMAL PROTEIN L24-A