IL_4V8T_150
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8T_150 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0396
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|8|A|44
4V8T|1|8|C|45
4V8T|1|8|G|46
4V8T|1|8|C|47
4V8T|1|8|A|48
4V8T|1|8|G|49
4V8T|1|8|C|50
4V8T|1|8|G|51
4V8T|1|8|A|52
4V8T|1|8|A|53
4V8T|1|8|A|54
4V8T|1|8|U|55
4V8T|1|8|G|56
4V8T|1|8|C|57
4V8T|1|8|G|58
4V8T|1|8|A|59
4V8T|1|8|U|60
4V8T|1|8|A|61
4V8T|1|8|C|62
4V8T|1|8|G|63
4V8T|1|8|U|64
*
4V8T|1|8|A|96
4V8T|1|8|A|97
4V8T|1|8|U|98
4V8T|1|8|C|99
4V8T|1|8|U|100
Current chains
- Chain 8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S RIBOSOMAL PROTEIN L25
- Chain h
- 60S RIBOSOMAL PROTEIN L35-A
- Chain j
- 60S RIBOSOMAL PROTEIN L37-A
- Chain l
- 60S RIBOSOMAL PROTEIN L39
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