IL_4V8X_241
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 4V8X|1|CA|A|1492, 4V8X|1|CA|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8X_241 not in the Motif Atlas
- Geometric match to IL_5Z1I_002
- Geometric discrepancy: 0.2941
- The information below is about IL_5Z1I_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V8X|1|CA|C|1407
4V8X|1|CA|A|1408
4V8X|1|CA|C|1409
*
4V8X|1|CA|G|1491
4V8X|1|CA|A|1492
4V8X|1|CA|A|1493
4V8X|1|CA|G|1494
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
- Chain CX
- BACTERIAL TOXIN YOEB
- Chain CY
- TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: