IL_4V8X_335

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCGC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_335 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2428

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V8X|1|DA|C|2139
4V8X|1|DA|C|2140
4V8X|1|DA|G|2141
4V8X|1|DA|C|2142
*
4V8X|1|DA|G|2149
4V8X|1|DA|U|2150
4V8X|1|DA|G|2151
4V8X|1|DA|G|2152

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain DC

50S RIBOSOMAL PROTEIN L1