IL_4V8Y_031
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4V8Y|1|B2|A|579
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_031 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.2323
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8Y|1|B2|G|562
4V8Y|1|B2|U|563
4V8Y|1|B2|G|564
4V8Y|1|B2|C|565
4V8Y|1|B2|C|566
4V8Y|1|B2|A|567
4V8Y|1|B2|G|568
*
4V8Y|1|B2|C|575
4V8Y|1|B2|G|576
4V8Y|1|B2|G|577
4V8Y|1|B2|U|578
4V8Y|1|B2|A|579
4V8Y|1|B2|A|580
4V8Y|1|B2|U|581
4V8Y|1|B2|U|582
4V8Y|1|B2|C|583
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A4
- 40S RIBOSOMAL PROTEIN S30-A
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
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