IL_4V8Y_032

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

4V8Y|1|B2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_032 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0703

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

4V8Y|1|B2|G|616
4V8Y|1|B2|U|617
4V8Y|1|B2|U|618
4V8Y|1|B2|A|619
4V8Y|1|B2|A|620
4V8Y|1|B2|A|621
4V8Y|1|B2|A|622
*
4V8Y|1|B2|U|1104
4V8Y|1|B2|C|1105

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A0

40S RIBOSOMAL PROTEIN S26-A

Chain AX

40S RIBOSOMAL PROTEIN S23-A