IL_4V8Y_034
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_034 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0577
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V8Y|1|B2|C|627
4V8Y|1|B2|G|628
4V8Y|1|B2|U|629
4V8Y|1|B2|A|630
4V8Y|1|B2|G|631
*
4V8Y|1|B2|U|968
4V8Y|1|B2|C|969
4V8Y|1|B2|A|970
4V8Y|1|B2|A|971
4V8Y|1|B2|G|972
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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