IL_4V8Y_058
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 4V8Y|1|B2|C|1158, 4V8Y|1|B2|C|1159
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_058 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1466
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
4V8Y|1|B2|A|1157
4V8Y|1|B2|C|1158
4V8Y|1|B2|C|1159
4V8Y|1|B2|A|1160
*
4V8Y|1|B2|U|1617
4V8Y|1|B2|C|1618
4V8Y|1|B2|C|1619
4V8Y|1|B2|C|1620
4V8Y|1|B2|U|1621
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A2
- 40S RIBOSOMAL PROTEIN S28-A
- Chain AF
- 40S RIBOSOMAL PROTEIN S5
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
- Chain CW
- Transfer RNA; tRNA
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