IL_4V8Y_066
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 4V8Y|1|B2|C|1274, 4V8Y|1|B2|U|1432, 4V8Y|1|B2|G|1435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_066 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0909
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B2|U|1272
4V8Y|1|B2|G|1273
4V8Y|1|B2|C|1274
4V8Y|1|B2|A|1275
4V8Y|1|B2|U|1276
4V8Y|1|B2|G|1277
4V8Y|1|B2|G|1278
*
4V8Y|1|B2|U|1430
4V8Y|1|B2|C|1431
4V8Y|1|B2|U|1432
4V8Y|1|B2|G|1433
4V8Y|1|B2|U|1434
4V8Y|1|B2|G|1435
4V8Y|1|B2|A|1436
4V8Y|1|B2|U|1437
4V8Y|1|B2|G|1438
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AK
- 40S RIBOSOMAL PROTEIN S10-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
Coloring options: