IL_4V8Y_097
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_097 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.0467
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B5|C|82
4V8Y|1|B5|U|83
4V8Y|1|B5|U|84
4V8Y|1|B5|A|85
4V8Y|1|B5|G|86
4V8Y|1|B5|U|87
4V8Y|1|B5|A|88
4V8Y|1|B5|A|89
*
4V8Y|1|B5|U|97
4V8Y|1|B5|G|98
4V8Y|1|B5|A|99
4V8Y|1|B5|A|100
4V8Y|1|B5|G|101
4V8Y|1|B5|C|102
4V8Y|1|B5|G|103
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
Coloring options: