IL_4V8Y_131
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_131 not in the Motif Atlas
- Homologous match to IL_5TBW_038
- Geometric discrepancy: 0.0499
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8Y|1|B5|G|991
4V8Y|1|B5|A|992
4V8Y|1|B5|G|993
4V8Y|1|B5|G|994
4V8Y|1|B5|U|995
4V8Y|1|B5|A|996
4V8Y|1|B5|A|997
*
4V8Y|1|B5|U|1052
4V8Y|1|B5|A|1053
4V8Y|1|B5|A|1054
4V8Y|1|B5|A|1055
4V8Y|1|B5|U|1056
4V8Y|1|B5|A|1057
4V8Y|1|B5|U|1058
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BS
- 60S RIBOSOMAL PROTEIN L20-B
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
Coloring options: