IL_4V8Y_151
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 4V8Y|1|B5|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_151 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.06
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8Y|1|B5|C|1376
4V8Y|1|B5|G|1377
4V8Y|1|B5|U|1378
*
4V8Y|1|B5|A|1428
4V8Y|1|B5|G|1429
4V8Y|1|B5|U|1430
4V8Y|1|B5|G|1431
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
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