IL_4V8Y_158
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4V8Y|1|B5|A|1588, 4V8Y|1|B5|A|1589
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_158 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.0604
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V8Y|1|B5|C|1532
4V8Y|1|B5|U|1533
4V8Y|1|B5|A|1534
4V8Y|1|B5|A|1535
4V8Y|1|B5|G|1536
*
4V8Y|1|B5|C|1585
4V8Y|1|B5|G|1586
4V8Y|1|B5|A|1587
4V8Y|1|B5|A|1588
4V8Y|1|B5|A|1589
4V8Y|1|B5|G|1590
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: