IL_4V8Y_246
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUGUGAAC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8Y|1|CN|U|2153
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_246 not in the Motif Atlas
- Homologous match to IL_3U4M_004
- Geometric discrepancy: 0.1882
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
4V8Y|1|CN|C|2150
4V8Y|1|CN|U|2151
4V8Y|1|CN|G|2152
4V8Y|1|CN|U|2153
4V8Y|1|CN|G|2154
4V8Y|1|CN|A|2155
4V8Y|1|CN|A|2156
4V8Y|1|CN|C|2157
*
4V8Y|1|CN|G|2176
4V8Y|1|CN|G|2177
4V8Y|1|CN|G|2178
4V8Y|1|CN|A|2179
4V8Y|1|CN|G|2180
Current chains
- Chain CN
- EUKARYOTIC RIBOSOMAL L1_RRNA
Nearby chains
- Chain By
- 50S RIBOSOMAL PROTEIN L1
- Chain CL
- 50S RIBOSOMAL PROTEIN L1
Coloring options: