IL_4V8Z_029

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_029 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.0798

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

4V8Z|1|B2|A|550
4V8Z|1|B2|G|551
4V8Z|1|B2|G|552
4V8Z|1|B2|G|553
4V8Z|1|B2|C|554
4V8Z|1|B2|A|555
4V8Z|1|B2|A|556
4V8Z|1|B2|G|557
*
4V8Z|1|B2|C|587
4V8Z|1|B2|U|588

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A4

40S RIBOSOMAL PROTEIN S30-A

Chain A7

SUPPRESSOR PROTEIN STM1

Chain AC

40S RIBOSOMAL PROTEIN S2

Chain AJ

40S RIBOSOMAL PROTEIN S9-A