IL_4V8Z_043

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UUC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_043 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.1706

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V8Z|1|B2|U|825
4V8Z|1|B2|U|826
4V8Z|1|B2|C|827
*
4V8Z|1|B2|G|845
4V8Z|1|B2|G|846
4V8Z|1|B2|A|847

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AL

40S RIBOSOMAL PROTEIN S11-A

Chain BR

60S RIBOSOMAL PROTEIN L19-B