IL_4V8Z_052
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B2|C|1096, 4V8Z|1|B2|U|1098, 4V8Z|1|B2|G|1100
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_052 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.0749
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B2|C|1034
4V8Z|1|B2|G|1035
4V8Z|1|B2|A|1036
*
4V8Z|1|B2|U|1095
4V8Z|1|B2|C|1096
4V8Z|1|B2|U|1097
4V8Z|1|B2|U|1098
4V8Z|1|B2|U|1099
4V8Z|1|B2|G|1100
4V8Z|1|B2|G|1101
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- 40S RIBOSOMAL PROTEIN S27-A
- Chain AC
- 40S RIBOSOMAL PROTEIN S2
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
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