IL_4V8Z_067
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 4V8Z|1|B2|A|1427
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_067 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.086
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
4V8Z|1|B2|C|1280
4V8Z|1|B2|G|1281
*
4V8Z|1|B2|C|1426
4V8Z|1|B2|A|1427
4V8Z|1|B2|G|1428
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- 5'-R(*AP*UP*GP)-3'
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