IL_4V8Z_068

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_068 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.2783

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

4V8Z|1|B2|U|1290
4V8Z|1|B2|G|1291
4V8Z|1|B2|G|1292
*
4V8Z|1|B2|C|1323
4V8Z|1|B2|G|1324
4V8Z|1|B2|A|1325

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AA

40S RIBOSOMAL PROTEIN S0-A

Chain AC

40S RIBOSOMAL PROTEIN S2

Chain AR

40S RIBOSOMAL PROTEIN S17-A