IL_4V8Z_078

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V8Z|1|B2|C|1637, 4V8Z|1|B2|A|1766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_078 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.0766

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V8Z|1|B2|C|1636
4V8Z|1|B2|C|1637
4V8Z|1|B2|G|1638
*
4V8Z|1|B2|C|1764
4V8Z|1|B2|A|1765
4V8Z|1|B2|A|1766
4V8Z|1|B2|G|1767

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A0

40S RIBOSOMAL PROTEIN S26-A

Chain A7

SUPPRESSOR PROTEIN STM1

Chain CW

Transfer RNA; tRNA

Chain CX

5'-R(*AP*UP*GP)-3'