IL_4V8Z_083

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_083 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.0748

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V8Z|1|B2|C|1653
4V8Z|1|B2|G|1654
4V8Z|1|B2|A|1655
4V8Z|1|B2|U|1656
*
4V8Z|1|B2|A|1744
4V8Z|1|B2|G|1745
4V8Z|1|B2|A|1746
4V8Z|1|B2|G|1747

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain Bn

60S RIBOSOMAL PROTEIN L41-B