IL_4V8Z_086
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_086 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.0665
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
4V8Z|1|B2|U|1669
4V8Z|1|B2|G|1670
4V8Z|1|B2|A|1671
4V8Z|1|B2|G|1672
*
4V8Z|1|B2|C|1729
4V8Z|1|B2|A|1730
4V8Z|1|B2|A|1731
4V8Z|1|B2|A|1732
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AG
- 40S RIBOSOMAL PROTEIN S6-A
- Chain AI
- 40S RIBOSOMAL PROTEIN S8-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BV
- 60S RIBOSOMAL PROTEIN L23-A
- Chain BW
- 60S RIBOSOMAL PROTEIN L24-A
Coloring options: