IL_4V8Z_093

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

4V8Z|1|B8|C|151

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_093 not in the Motif Atlas

Geometric match to IL_5TBW_002

Geometric discrepancy: 0.1672

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V8Z|1|B5|C|7
4V8Z|1|B5|C|8
*
4V8Z|1|B8|G|150
4V8Z|1|B8|C|151
4V8Z|1|B8|G|152

Current chains

Chain B5

25S RIBOSOMAL RNA

Chain B8

5.8S RIBOSOMAL RNA

Nearby chains

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain BX

60S RIBOSOMAL PROTEIN L25