IL_4V8Z_103
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUC*GAGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_103 not in the Motif Atlas
- Homologous match to IL_5TBW_011
- Geometric discrepancy: 0.2205
- The information below is about IL_5TBW_011
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.3
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8Z|1|B5|U|177
4V8Z|1|B5|U|178
4V8Z|1|B5|C|179
*
4V8Z|1|B5|G|237
4V8Z|1|B5|A|238
4V8Z|1|B5|G|239
4V8Z|1|B5|U|240
4V8Z|1|B5|G|241
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
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