IL_4V8Z_123

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_123 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0692

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V8Z|1|B5|U|834
4V8Z|1|B5|G|835
4V8Z|1|B5|A|836
4V8Z|1|B5|A|837
4V8Z|1|B5|G|838
*
4V8Z|1|B5|U|855
4V8Z|1|B5|G|856
4V8Z|1|B5|G|857
4V8Z|1|B5|A|858
4V8Z|1|B5|G|859

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BR

60S RIBOSOMAL PROTEIN L19-B