IL_4V8Z_133
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B5|G|1001
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_133 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.0726
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
4V8Z|1|B5|G|999
4V8Z|1|B5|C|1000
4V8Z|1|B5|G|1001
4V8Z|1|B5|A|1002
4V8Z|1|B5|A|1003
4V8Z|1|B5|U|1004
*
4V8Z|1|B5|A|1046
4V8Z|1|B5|A|1047
4V8Z|1|B5|A|1048
4V8Z|1|B5|C|1049
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
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