IL_4V8Z_136

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_136 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1951

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V8Z|1|B5|G|1013
4V8Z|1|B5|U|1014
4V8Z|1|B5|U|1015
*
4V8Z|1|B5|G|1035
4V8Z|1|B5|A|1036
4V8Z|1|B5|C|1037

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1