IL_4V8Z_145
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_145 not in the Motif Atlas
- Geometric match to IL_5TBW_049
- Geometric discrepancy: 0.0472
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B5|U|1173
4V8Z|1|B5|G|1174
4V8Z|1|B5|C|1175
4V8Z|1|B5|C|1176
4V8Z|1|B5|G|1177
4V8Z|1|B5|G|1178
4V8Z|1|B5|A|1179
4V8Z|1|B5|A|1180
*
4V8Z|1|B5|U|1325
4V8Z|1|B5|A|1326
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BO
- 60S RIBOSOMAL PROTEIN L16-A
- Chain BS
- 60S RIBOSOMAL PROTEIN L20-B
- Chain Bf
- 60S RIBOSOMAL PROTEIN L33-A
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