IL_4V8Z_159

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_159 not in the Motif Atlas

Geometric match to IL_5F5F_001

Geometric discrepancy: 0.2572

The information below is about IL_5F5F_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V8Z|1|B5|G|1560
4V8Z|1|B5|G|1561
4V8Z|1|B5|C|1562
*
4V8Z|1|B5|G|1577
4V8Z|1|B5|C|1578
4V8Z|1|B5|C|1579

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BX

60S RIBOSOMAL PROTEIN L25