IL_4V8Z_160

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_160 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.0721

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

4V8Z|1|B5|G|1618
4V8Z|1|B5|A|1619
4V8Z|1|B5|U|1620
4V8Z|1|B5|A|1621
*
4V8Z|1|B5|U|1824
4V8Z|1|B5|G|1825
4V8Z|1|B5|C|1826

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Bk

60S RIBOSOMAL PROTEIN L38