IL_4V8Z_163

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

4V8Z|1|B5|U|1629

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_163 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.1172

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8Z|1|B5|U|1627
4V8Z|1|B5|C|1628
4V8Z|1|B5|U|1629
4V8Z|1|B5|U|1630
4V8Z|1|B5|C|1631
*
4V8Z|1|B5|G|1811
4V8Z|1|B5|G|1812
4V8Z|1|B5|A|1813
4V8Z|1|B5|A|1814
4V8Z|1|B5|U|1815
4V8Z|1|B5|A|1816

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BZ

60S RIBOSOMAL PROTEIN L27-A