IL_4V8Z_174

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

4V8Z|1|B5|G|2335

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_174 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.0627

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|A|1901
4V8Z|1|B5|G|1902
4V8Z|1|B5|U|1903
4V8Z|1|B5|C|1904
4V8Z|1|B5|G|1905
4V8Z|1|B5|G|1906
*
4V8Z|1|B5|C|2333
4V8Z|1|B5|U|2334
4V8Z|1|B5|G|2335
4V8Z|1|B5|U|2336

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BV

60S RIBOSOMAL PROTEIN L23-A