IL_4V8Z_184

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4V8Z|1|B5|A|2281, 4V8Z|1|B5|C|2287, 4V8Z|1|B5|C|2306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_184 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0688

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8Z|1|B5|C|2277
4V8Z|1|B5|C|2278
4V8Z|1|B5|A|2279
4V8Z|1|B5|A|2280
4V8Z|1|B5|A|2281
4V8Z|1|B5|U|2282
4V8Z|1|B5|G|2283
4V8Z|1|B5|C|2284
4V8Z|1|B5|C|2285
4V8Z|1|B5|U|2286
4V8Z|1|B5|C|2287
4V8Z|1|B5|G|2288
*
4V8Z|1|B5|C|2304
4V8Z|1|B5|G|2305
4V8Z|1|B5|C|2306
4V8Z|1|B5|G|2307

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Bn

60S RIBOSOMAL PROTEIN L41-B

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2